Just a follow-up on this post. I finally finished my engine swap and able to start and run the car. Car runs rather good. It's been a long year getting this truck back on the road. In addition, I have a new Exedy clutch kit (Pressure plate, clutch disk, and throwout bearing), new timing belt, water pump, and I also changed all the gear fluids (differential, transfer, gear oil, etc).
Only issue I have now is I'm getting a P0335 (Crankshaft position sensor) code. I think this was because I stretched the cable while trying to install the transmission so I'll have to figure out what to do about this. It is a part of the wiring harness so it will be rather tricky to really mess with it.
Also after looking around the forum on how to loosen the crankshaft pulley bolt, I found a very easy way to do it. I will post a separate topic on that in a little bit.
Thanks to all for the help provided.